| Assembly Assembly | Locus_ID Locus_ID | Version Version | Definition Sequence description | bp_chromo_A Total number of 'A' nucleotides in the whole sequence | bp_chromo_T Total number of 'T' nucleotides in the whole sequence | bp_chromo_C Total number of 'C' nucleotides in the whole sequence | bp_chromo_G Total number of 'G' nucleotides in the whole sequence | bp_chromo_N Total number of 'N' nucleotides in the whole sequence | bp_chromo_tot Total number of nucleotides in the whole sequence | fr_chromo_A Frequency of 'A' nucleotides in the whole sequence | fr_chromo_T Frequency of 'T' nucleotides in the whole sequence | fr_chromo_C Frequency of 'C' nucleotides in the whole sequence | fr_chromo_G Frequency of 'G' nucleotides in the whole sequence | fr_chromo_N Frequency of 'N' nucleotides in the whole sequence | GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence | topo_entropy_chromo Topological entropy of the whole sequence | chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence | chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee | shannon_chromo Shannon entropy of the whole sequence | n_gene_pos Number of genes in the positive strand | n_gene_neg Number of genes in the negative strand | n_gene_tot Total number of genes in the chromosome | bp_gene_A Number of 'A' bases in total genes | bp_gene_T Number of 'T' bases in total genes | bp_gene_C Number of 'C' bases in total genes | bp_gene_G Number of 'G' bases in total genes | bp_gene_N Number of 'N' bases in total genes | bp_gene_tot Total number of bases in total genes | fr_gene_A Frequency of 'A' bases among total gene bases | fr_gene_T Frequency of 'T' bases among total gene bases | fr_gene_C Frequency of 'C' bases among total gene bases | fr_gene_G Frequency of 'G' bases among total gene bases | fr_gene_N Frequency of 'N' bases among total gene bases | GC_gene Percentage of 'G' and 'C' bases in total genes | topo_entropy_gene Topological entropy calculated from total gene sequences | chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes | chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes | shannon_gene Shannon entropy score for total genes | bp_gene_overlap_tot Number of bases overlapping between genes on two strands | n_cds_pos Number of CDS in the positive strand | n_cds_neg Number of CDS in the negative strand | n_cds_tot Total number of CDS in the chromosome | bp_cds_A Number of 'A' bases in total CDS (coding sequences) | bp_cds_T Number of 'T' bases in total CDS | bp_cds_C Number of 'C' bases in total CDS | bp_cds_G Number of 'G' bases in total CDS | bp_cds_N Number of 'N' bases in total CDS | bp_cds_tot Total bases in total CDS | fr_cds_A Frequency of 'A' bases among total CDS bases | fr_cds_T Frequency of 'T' bases among total CDS bases | fr_cds_C Frequency of 'C' bases among total CDS bases | fr_cds_G Frequency of 'G' bases among total CDS bases | fr_cds_N Frequency of 'N' bases among total CDS bases | GC_cds Percentage of 'G' and 'C' bases in total CDS | topo_entropy_cds Topological entropy calculated from total CDS sequences | chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS | chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS | shannon_cds Shannon entropy score for total CDS | bp_cds_overlap_tot Number of bases overlapping between CDS on two strands | bp_cds_intron_A Number of 'A' bases in total introns between CDS | bp_cds_intron_T Number of 'T' bases in total introns between CDS | bp_cds_intron_C Number of 'C' bases in total introns between CDS | bp_cds_intron_G Number of 'G' bases in total introns between CDS | bp_cds_intron_N Number of 'N' bases in total introns between CDS | bp_cds_intron_tot Total bases in total introns between CDS | fr_cds_intron_A Frequency of 'A' bases in total introns between CDS | fr_cds_intron_T Frequency of 'T' bases in total introns between CDS | fr_cds_intron_C Frequency of 'C' bases in total introns between CDS | fr_cds_intron_G Frequency of 'G' bases in total introns between CDS | fr_cds_intron_N Frequency of 'N' bases in total introns between CDS | GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS | topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS | chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS | chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS | shannon_cds_intron Shannon entropy score for total introns between CDS | bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands | n_ncRNA_pos Number of ncRNA in the positive strand | n_ncRNA_neg Number of ncRNA in the negative strand | n_ncRNA_tot Total number of ncRNA in the chromosome | bp_ncRNA_A Number of 'A' bases in total ncRNA | bp_ncRNA_T bp_ncRNA_T | bp_ncRNA_C Number of 'C' bases in total ncRNA | bp_ncRNA_G Number of 'G' bases in total ncRNA | bp_ncRNA_N Number of 'N' bases in total ncRNA | bp_ncRNA_tot Total bases in total ncRNA | fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases | fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases | fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases | fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases | fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases | GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA | topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences | chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA | chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA | shannon_ncRNA Shannon entropy score for total ncRNA | bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands | bp_nc_intron_A Number of 'A' bases in total introns between ncRNA | bp_nc_intron_T Number of 'T' bases in total introns between ncRNA | bp_nc_intron_C Number of 'C' bases in total introns between ncRNA | bp_nc_intron_G Number of 'G' bases in total introns between ncRNA | bp_nc_intron_N Number of 'N' bases in total introns between ncRNA | bp_nc_intron_tot Total bases in total introns between ncRNA | fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA | fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA | fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA | fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA | fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA | GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA | topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA | chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA | chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA | shannon_nc_intron Shannon entropy score for total introns between ncRNA | bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands | n_tRNA_pos Number of tRNA in the positive strand | n_tRNA_neg Number of tRNA in the negative strand | n_tRNA_tot Total number of tRNA in the chromosome | bp_tRNA_A Number of 'A' bases in total tRNA | bp_tRNA_T Number of 'T' bases in total tRNA | bp_tRNA_C Number of 'C' bases in total tRNA | bp_tRNA_G Number of 'G' bases in total tRNA | bp_tRNA_N Number of 'N' bases in total tRNA | bp_tRNA_tot Total bases in total tRNA | fr_tRNA_A Frequency of 'A' bases among total tRNA bases | fr_tRNA_T Frequency of 'T' bases among total tRNA bases | fr_tRNA_C Frequency of 'C' bases among total tRNA bases | fr_tRNA_G Frequency of 'G' bases among total tRNA bases | fr_tRNA_N Frequency of 'N' bases among total tRNA bases | GC_tRNA Percentage of 'G' and 'C' bases in total tRNA | topo_entropy_tRNA Topological entropy calculated from total tRNA sequences | chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA | chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA | shannon_tRNA Shannon entropy score for total tRNA | bp_tRNA_overlap_tot Number of bases overlapping between tRNA on two strands | n_rRNA_pos Number of rRNA in the positive strand | n_rRNA_neg Number of rRNA in the negative strand | n_rRNA_tot Total number of rRNA in the chromosome | bp_rRNA_A Number of 'A' bases in total rRNA | bp_rRNA_T Number of 'T' bases in total rRNA | bp_rRNA_C Number of 'C' bases in total rRNA | bp_rRNA_G Number of 'G' bases in total rRNA | bp_rRNA_N Number of 'N' bases in total rRNA | bp_rRNA_tot Total bases in total rRNA | fr_rRNA_A Frequency of 'A' bases among total rRNA bases | fr_rRNA_T Frequency of 'T' bases among total rRNA bases | fr_rRNA_C Frequency of 'C' bases among total rRNA bases | fr_rRNA_G Frequency of 'G' bases among total rRNA bases | fr_rRNA_N Frequency of 'N' bases among total rRNA bases | GC_rRNA Percentage of 'G' and 'C' bases in total rRNA | topo_entropy_rRNA Topological entropy calculated from total rRNA sequences | chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA | chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA | shannon_rRNA Shannon entropy score for total rRNA | bp_rRNA_overlap_tot Number of bases overlapping between rRNA on two strands | ATG ATG | AAG AAG | GTA GTA | ACT ACT | GCA GCA | GAG GAG | GCT GCT | ATT ATT | TCC TCC | TGG TGG | AAT AAT | GAA GAA | TCA TCA | ACG ACG | AGT AGT | AAC AAC | TCT TCT | GTG GTG | TTC TTC | TTT TTT | CTG CTG | GGT GGT | CTC CTC | GAT GAT | CAG CAG | ACC ACC | CTA CTA | TTG TTG | TAT TAT | GGA GGA | ATC ATC | CTT CTT | GTC GTC | ATA ATA | ACA ACA | GAC GAC | CAC CAC | CCC CCC | TAC TAC | GCC GCC | AGC AGC | CGC CGC | AAA AAA | GGC GGC | TGC TGC | GTT GTT | GGG GGG | AGA AGA | TGT TGT | CAT CAT | TCG TCG | GCG GCG | TTA TTA | CCT CCT | AGG AGG | CCA CCA | TAG TAG | CGG CGG | CCG CCG | CGT CGT | CAA CAA | TAA TAA | TGA TGA | CGA CGA |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NA | NC_005997 | NC_005997.1 | St Croix river virus segment 1 putative RNA-dependent RNA polymerase VP1 gene; complete cds. | 926 | 1083 | 1148 | 932 | 0 | 4089 | 0.23 | 0.26 | 0.28 | 0.23 | 0 | 0.51 | 0.9231 | 0.182 | 0.8334 | 1.9937 | 1 | 0 | 1 | 917 | 1069 | 1132 | 920 | 0 | 4038 | 0.23 | 0.26 | 0.28 | 0.23 | 0 | 0.51 | 0.9219 | 0.1798 | 0.8353 | 1.9938 | 0 | 1 | 0 | 1 | 917 | 1069 | 1132 | 920 | 0 | 4038 | 0.23 | 0.26 | 0.28 | 0.23 | 0 | 0.51 | 0.9219 | 0.1798 | 0.8353 | 1.9938 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 33 | 24 | 9 | 23 | 15 | 37 | 20 | 26 | 29 | 8 | 14 | 30 | 16 | 21 | 12 | 25 | 46 | 15 | 44 | 31 | 26 | 15 | 51 | 37 | 32 | 20 | 18 | 14 | 23 | 25 | 29 | 31 | 32 | 11 | 12 | 39 | 26 | 21 | 18 | 23 | 6 | 17 | 23 | 22 | 3 | 30 | 12 | 20 | 9 | 22 | 22 | 32 | 8 | 29 | 11 | 12 | 1 | 12 | 15 | 21 | 19 | 0 | 0 | 19 |
| NA | NC_006006 | NC_006006.1 | St Croix River virus chromosome segment 10; complete genome. | 168 | 191 | 209 | 196 | 0 | 764 | 0.22 | 0.25 | 0.27 | 0.26 | 0 | 0.53 | 0.9072 | 0.0962 | 0.9087 | 1.9956 | 1 | 0 | 1 | 150 | 172 | 187 | 166 | 0 | 675 | 0.22 | 0.25 | 0.28 | 0.25 | 0 | 0.52 | 0.906 | 0.1278 | 0.8799 | 1.9955 | 0 | 1 | 0 | 1 | 150 | 172 | 187 | 166 | 0 | 675 | 0.22 | 0.25 | 0.28 | 0.25 | 0 | 0.52 | 0.906 | 0.1278 | 0.8799 | 1.9955 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 11 | 10 | 2 | 4 | 2 | 7 | 7 | 4 | 4 | 2 | 2 | 2 | 2 | 6 | 1 | 3 | 11 | 3 | 1 | 4 | 6 | 3 | 7 | 2 | 5 | 2 | 2 | 2 | 1 | 3 | 8 | 8 | 1 | 2 | 4 | 2 | 2 | 4 | 1 | 6 | 2 | 3 | 3 | 1 | 0 | 7 | 2 | 3 | 2 | 4 | 6 | 10 | 1 | 3 | 0 | 4 | 1 | 3 | 3 | 2 | 4 | 0 | 0 | 2 |
| NA | NC_005998 | NC_005998.1 | St Croix River virus chromosome segment 2; complete genome. | 598 | 752 | 762 | 635 | 0 | 2747 | 0.22 | 0.27 | 0.28 | 0.23 | 0 | 0.51 | 0.9236 | 0.205 | 0.8143 | 1.9921 | 1 | 0 | 1 | 578 | 737 | 745 | 613 | 0 | 2673 | 0.22 | 0.28 | 0.28 | 0.23 | 0 | 0.51 | 0.9229 | 0.2181 | 0.8035 | 1.9911 | 0 | 1 | 0 | 1 | 578 | 737 | 745 | 613 | 0 | 2673 | 0.22 | 0.28 | 0.28 | 0.23 | 0 | 0.51 | 0.9229 | 0.2181 | 0.8035 | 1.9911 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 25 | 14 | 5 | 18 | 9 | 21 | 30 | 29 | 12 | 9 | 14 | 10 | 13 | 15 | 5 | 14 | 29 | 16 | 26 | 13 | 8 | 10 | 32 | 29 | 17 | 16 | 5 | 7 | 15 | 15 | 19 | 26 | 28 | 15 | 10 | 29 | 10 | 14 | 18 | 19 | 5 | 10 | 10 | 17 | 2 | 21 | 8 | 8 | 5 | 13 | 18 | 14 | 3 | 21 | 12 | 12 | 1 | 5 | 14 | 10 | 6 | 0 | 0 | 7 |
| NA | NC_005999 | NC_005999.1 | St Croix River virus chromosome segment 3; complete genome. | 448 | 570 | 530 | 476 | 0 | 2024 | 0.22 | 0.28 | 0.26 | 0.24 | 0 | 0.5 | 0.9285 | 0.1735 | 0.842 | 1.9937 | 1 | 0 | 1 | 436 | 553 | 515 | 461 | 0 | 1965 | 0.22 | 0.28 | 0.26 | 0.23 | 0 | 0.5 | 0.9283 | 0.1736 | 0.8418 | 1.9938 | 0 | 1 | 0 | 1 | 436 | 553 | 515 | 461 | 0 | 1965 | 0.22 | 0.28 | 0.26 | 0.23 | 0 | 0.5 | 0.9283 | 0.1736 | 0.8418 | 1.9938 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 15 | 10 | 7 | 11 | 6 | 21 | 16 | 14 | 7 | 4 | 7 | 19 | 6 | 4 | 4 | 3 | 24 | 8 | 19 | 17 | 15 | 5 | 16 | 19 | 16 | 10 | 8 | 11 | 13 | 13 | 14 | 23 | 18 | 9 | 9 | 17 | 9 | 9 | 7 | 7 | 2 | 7 | 12 | 16 | 3 | 15 | 9 | 7 | 5 | 11 | 7 | 7 | 1 | 21 | 7 | 12 | 1 | 7 | 6 | 13 | 8 | 0 | 0 | 8 |
| NA | NC_006000 | NC_006000.1 | St Croix River virus chromosome segment 4; complete genome. | 421 | 543 | 541 | 512 | 0 | 2017 | 0.21 | 0.27 | 0.27 | 0.25 | 0 | 0.52 | 0.9274 | 0.1541 | 0.8609 | 1.9928 | 1 | 0 | 1 | 402 | 520 | 519 | 491 | 0 | 1932 | 0.21 | 0.27 | 0.27 | 0.25 | 0 | 0.52 | 0.9264 | 0.1557 | 0.8596 | 1.9926 | 0 | 1 | 0 | 1 | 402 | 520 | 519 | 491 | 0 | 1932 | 0.21 | 0.27 | 0.27 | 0.25 | 0 | 0.52 | 0.9264 | 0.1557 | 0.8596 | 1.9926 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 15 | 10 | 5 | 12 | 3 | 21 | 16 | 9 | 15 | 15 | 8 | 11 | 12 | 3 | 4 | 9 | 11 | 8 | 21 | 13 | 16 | 14 | 17 | 22 | 13 | 6 | 5 | 6 | 16 | 13 | 22 | 17 | 17 | 3 | 2 | 25 | 8 | 13 | 7 | 14 | 2 | 14 | 7 | 11 | 3 | 11 | 5 | 8 | 7 | 11 | 8 | 8 | 5 | 10 | 9 | 3 | 1 | 8 | 8 | 9 | 8 | 0 | 0 | 11 |
| NA | NC_006001 | NC_006001.1 | St Croix River virus chromosome segment 5; complete genome. | 402 | 395 | 451 | 416 | 0 | 1664 | 0.24 | 0.24 | 0.27 | 0.25 | 0 | 0.52 | 0.9219 | 0.0492 | 0.9525 | 1.9981 | 1 | 0 | 1 | 385 | 366 | 419 | 384 | 0 | 1554 | 0.25 | 0.24 | 0.27 | 0.25 | 0 | 0.52 | 0.9197 | 0.0689 | 0.9336 | 1.9983 | 0 | 1 | 0 | 1 | 385 | 366 | 419 | 384 | 0 | 1554 | 0.25 | 0.24 | 0.27 | 0.25 | 0 | 0.52 | 0.9197 | 0.0689 | 0.9336 | 1.9983 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 14 | 9 | 5 | 8 | 9 | 27 | 20 | 15 | 8 | 1 | 8 | 12 | 9 | 7 | 4 | 11 | 11 | 5 | 11 | 3 | 4 | 14 | 21 | 10 | 13 | 7 | 3 | 4 | 7 | 7 | 8 | 13 | 14 | 9 | 2 | 8 | 8 | 1 | 7 | 25 | 4 | 7 | 10 | 5 | 0 | 12 | 5 | 10 | 1 | 9 | 7 | 11 | 1 | 12 | 5 | 7 | 1 | 3 | 3 | 6 | 13 | 0 | 0 | 4 |
| NA | NC_006002 | NC_006002.1 | St Croix River virus chromosome segment 6; complete genome. | 318 | 470 | 481 | 388 | 0 | 1657 | 0.19 | 0.28 | 0.29 | 0.23 | 0 | 0.52 | 0.9224 | 0.2999 | 0.7416 | 1.9811 | 1 | 0 | 1 | 292 | 435 | 458 | 369 | 0 | 1554 | 0.19 | 0.28 | 0.29 | 0.24 | 0 | 0.53 | 0.9209 | 0.3043 | 0.7385 | 1.9794 | 0 | 1 | 0 | 1 | 292 | 435 | 458 | 369 | 0 | 1554 | 0.19 | 0.28 | 0.29 | 0.24 | 0 | 0.53 | 0.9209 | 0.3043 | 0.7385 | 1.9794 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 8 | 5 | 3 | 10 | 4 | 13 | 25 | 8 | 9 | 10 | 4 | 9 | 11 | 5 | 2 | 4 | 12 | 2 | 17 | 12 | 11 | 7 | 25 | 16 | 12 | 3 | 8 | 6 | 10 | 9 | 13 | 11 | 10 | 5 | 1 | 16 | 13 | 10 | 4 | 12 | 3 | 5 | 4 | 7 | 4 | 14 | 8 | 4 | 6 | 12 | 4 | 8 | 3 | 9 | 3 | 10 | 1 | 8 | 6 | 12 | 4 | 0 | 0 | 8 |
| NA | NC_006003 | NC_006003.1 | St Croix River virus chromosome segment 7; complete genome. | 329 | 372 | 429 | 333 | 0 | 1463 | 0.22 | 0.25 | 0.29 | 0.23 | 0 | 0.52 | 0.9145 | 0.1873 | 0.8303 | 1.9915 | 1 | 0 | 1 | 306 | 358 | 408 | 317 | 0 | 1389 | 0.22 | 0.26 | 0.29 | 0.23 | 0 | 0.52 | 0.9137 | 0.2038 | 0.8159 | 1.9905 | 0 | 1 | 0 | 1 | 306 | 358 | 408 | 317 | 0 | 1389 | 0.22 | 0.26 | 0.29 | 0.23 | 0 | 0.52 | 0.9137 | 0.2038 | 0.8159 | 1.9905 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 6 | 16 | 5 | 14 | 3 | 17 | 7 | 6 | 18 | 4 | 7 | 13 | 12 | 11 | 2 | 2 | 11 | 8 | 14 | 8 | 10 | 7 | 13 | 12 | 6 | 9 | 3 | 4 | 6 | 6 | 5 | 20 | 8 | 3 | 4 | 11 | 3 | 6 | 1 | 7 | 4 | 10 | 9 | 5 | 2 | 7 | 6 | 5 | 1 | 10 | 9 | 5 | 0 | 26 | 9 | 7 | 1 | 1 | 8 | 3 | 3 | 0 | 0 | 4 |
| NA | NC_006004 | NC_006004.1 | St Croix River virus chromosome segment 8; complete genome. | 245 | 318 | 376 | 317 | 0 | 1256 | 0.2 | 0.25 | 0.3 | 0.25 | 0 | 0.55 | 0.9231 | 0.2148 | 0.8068 | 1.9839 | 1 | 0 | 1 | 219 | 292 | 340 | 289 | 0 | 1140 | 0.19 | 0.26 | 0.3 | 0.25 | 0 | 0.55 | 0.9226 | 0.2239 | 0.8 | 1.983 | 0 | 1 | 0 | 1 | 219 | 292 | 340 | 289 | 0 | 1140 | 0.19 | 0.26 | 0.3 | 0.25 | 0 | 0.55 | 0.9226 | 0.2239 | 0.8 | 1.983 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 5 | 2 | 2 | 6 | 5 | 9 | 15 | 4 | 5 | 3 | 9 | 6 | 5 | 6 | 3 | 8 | 7 | 10 | 21 | 3 | 5 | 10 | 11 | 13 | 7 | 8 | 3 | 1 | 4 | 7 | 9 | 12 | 8 | 5 | 2 | 10 | 3 | 8 | 12 | 12 | 0 | 2 | 3 | 11 | 3 | 6 | 5 | 0 | 0 | 2 | 3 | 9 | 2 | 10 | 5 | 6 | 1 | 4 | 5 | 11 | 1 | 0 | 0 | 7 |
| NA | NC_006005 | NC_006005.1 | St Croix River virus chromosome segment 9; complete genome. | 188 | 188 | 207 | 181 | 0 | 764 | 0.25 | 0.25 | 0.27 | 0.24 | 0 | 0.51 | 0.9118 | 0.067 | 0.9372 | 1.9982 | 1 | 0 | 1 | 176 | 173 | 182 | 168 | 0 | 699 | 0.25 | 0.25 | 0.26 | 0.24 | 0 | 0.5 | 0.9107 | 0.0486 | 0.953 | 1.9994 | 0 | 1 | 0 | 1 | 176 | 173 | 182 | 168 | 0 | 699 | 0.25 | 0.25 | 0.26 | 0.24 | 0 | 0.5 | 0.9107 | 0.0486 | 0.953 | 1.9994 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 6 | 4 | 1 | 4 | 2 | 12 | 4 | 5 | 7 | 1 | 5 | 5 | 2 | 1 | 2 | 3 | 8 | 6 | 5 | 1 | 2 | 4 | 5 | 7 | 4 | 5 | 1 | 3 | 5 | 5 | 3 | 7 | 1 | 3 | 3 | 5 | 1 | 3 | 3 | 8 | 1 | 1 | 7 | 3 | 0 | 6 | 1 | 1 | 0 | 4 | 4 | 5 | 2 | 7 | 4 | 4 | 0 | 3 | 2 | 5 | 7 | 0 | 1 | 3 |